2018-02-13T08:49:41.000Z2025-11-05 21:33:45
description
putative 2-5 RNA-ligase
similar to 2´-CPDase
locus
BSU29960
BSU_29960
geneLength
549
552
function
RNA metabolism
nucleotide metabolism
product
putative 2-5 RNA-ligase
putative 2´-CPDase
ec
outlinks
bsu
BSU29960
BSU_29960
Gene
Coordinates
3,065,751 → 3,066,302
3,065,751 3,066,302
The protein
Protein family
UPF0097 family (according to Swiss-Prot)
2H phosphoesterase superfamily (with [[protein|YjcG]], according to UniProt) [pubmed|31422053]
The protein
Paralogous protein(s)
[[protein|YjcG]]
[[this]]
Biological materials
Mutant
MGNA-A431 (ytlP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/431 NBRP B. subtilis, Japan]
BKE29960 (Δ[[gene|ytlP]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG
BKK29960 (Δ[[gene|ytlP]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG
MGNA-A431 (ytlP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/431 NBRP B. subtilis, Japan]
BKE29960 ([[gene|ytlP]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG
BKK29960 ([[gene|ytlP]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29960 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGTCTGACACTCCCTT, downstream forward: _UP4_TAATTCATTGCGGAGTGGAG
References
The protein
Catalyzed reaction/ biological activity
H2O + RNA(n)-2',3'-cyclic phosphate --> H+ + RNA(n)-2'- phosphate (according to UniProt)
The protein
Structure
[PDB|1IUH] (from Thermus thermophilus, 24% identity) [pubmed|12798681]